- CELLPROFILER ANALYST IMAGE REGISTRATION FOR MAC OS X
- CELLPROFILER ANALYST IMAGE REGISTRATION SOFTWARE
- CELLPROFILER ANALYST IMAGE REGISTRATION FREE
Since its original publication ( Jones et al., 2008), CellProfiler Analyst has been rewritten in Python (vs. Here, we present major improvements to CellProfiler Analyst. the HCDC set of modules for KNIME ( Berthold et al., 2009)) are no longer available/maintained.
CELLPROFILER ANALYST IMAGE REGISTRATION SOFTWARE
Compared to command-line-based data exploration software like cellHTS ( Boutros et al., 2006) and imageHTS ( Pau et al., 2013) and the web tool web CellHTS2 ( Pelz et al., 2010), CellProfiler Analyst provides interactive object classification and image viewing. Advanced Cell Classifier ( Horvath et al., 2011) shares many of the classification features of CellProfiler Analyst, but it lacks HCS data exploration and visualization tools. Some distinctive and critical features of CellProfiler Analyst are its user-friendly object-based machine learning interface, its ability to handle the tremendous scale of HCS experiments (millions of cell images), its gating capabilities that allow observing relationships among different data displays, and its exploration tools which enable interactively viewing connections between cell-level data and well-level data, and among raw images, processed/segmented images, extracted features and sample metadata.Ĭompared to other commonly-cited open-source biological image classification software like Ilastik ( Sommer et al., 2011), CellCognition ( Held et al., 2010) and WND-CHARM ( Orlov et al., 2008), CellProfiler Analyst has the advantage of containing companion visualization tools, being suitable for high-throughput datasets, having multiple classifier options, and allowing both cell and field-of-view classification. Its tools can help identify complex and subtle phenotypes, improve quality control and provide single-cell and population-level information from experiments. Using data from feature extraction software such as CellProfiler ( Kamentsky et al., 2011), CellProfiler Analyst offers easy-to-use tools for exploration and mining of image data, which is being generated in ever increasing amounts, particularly in high-content screens (HCS). We implemented an automatic build process that supports nightly updates and regular release cycles for the software.Ĭontact: information: Supplementary data are available at Bioinformatics online.ĬellProfiler Analyst is open-source software for biological image-based classification, data exploration and visualization with an interactive user interface designed for biologists and data scientists.
CELLPROFILER ANALYST IMAGE REGISTRATION FOR MAC OS X
It is available as a packaged application for Mac OS X and Microsoft Windows and can be compiled for Linux.
CELLPROFILER ANALYST IMAGE REGISTRATION FREE
CellProfiler Analyst 2.0, completely rewritten in Python, builds on these features and adds enhanced supervised machine learning capabilities (Classifier), as well as visualization tools to overview an experiment (Plate Viewer and Image Gallery).Īvailability and Implementation: CellProfiler Analyst 2.0 is free and open source, available at and from GitHub ( ) under the BSD license. Summary: CellProfiler Analyst allows the exploration and visualization of image-based data, together with the classification of complex biological phenotypes, via an interactive user interface designed for biologists and data scientists.
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